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Evolutionary dynamics of recent peste des petits ruminants virus epidemic in China during 2013-2014.

Abstract Peste des petits ruminants virus (PPRV) causes a highly contagious disease, peste des petits ruminants (PPR), in sheep and goats which has been considered as a serious threat to the local economy in Africa and Asia. However, the in-depth evolutionary dynamics of PPRV during an epidemic is not well understood. We conducted phylogenetic analysis on genomic sequences of 25 PPRV strains from China 2013-2014 outbreaks. All these strains clustered into a novel clade in lineage 4. An evolutionary rate of 2.61 × 10(-6) nucleotide substitutions per site per day was estimated, dating the most recent common ancestor of PPRV China 2013-2014 strains to early August 2013. Transmission network analysis revealed that all the virus sequences could be grouped into five clusters of infection, suggesting long-distance animal transmission play an important role in the spread of PPRV in China. These results expanded our knowledge for PPRV evolution to achieve effective control measures.
PMID
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Authors

Mayor MeshTerms

Epidemics

Evolution, Molecular

Genetic Variation

Keywords

Evolution

Peste des petits ruminants virus

Phylogenetic analysis

Transmission

Journal Title virology
Publication Year Start




PMID- 28734191
OWN - NLM
STAT- MEDLINE
DA  - 20170722
DCOM- 20170829
LR  - 20170829
IS  - 1096-0341 (Electronic)
IS  - 0042-6822 (Linking)
VI  - 510
DP  - 2017 Oct
TI  - Evolutionary dynamics of recent peste des petits ruminants virus epidemic in
      China during 2013-2014.
PG  - 156-164
LID - S0042-6822(17)30236-2 [pii]
LID - 10.1016/j.virol.2017.07.018 [doi]
AB  - Peste des petits ruminants virus (PPRV) causes a highly contagious disease, peste
      des petits ruminants (PPR), in sheep and goats which has been considered as a
      serious threat to the local economy in Africa and Asia. However, the in-depth
      evolutionary dynamics of PPRV during an epidemic is not well understood. We
      conducted phylogenetic analysis on genomic sequences of 25 PPRV strains from
      China 2013-2014 outbreaks. All these strains clustered into a novel clade in
      lineage 4. An evolutionary rate of 2.61 x 10-6 nucleotide substitutions per site 
      per day was estimated, dating the most recent common ancestor of PPRV China
      2013-2014 strains to early August 2013. Transmission network analysis revealed
      that all the virus sequences could be grouped into five clusters of infection,
      suggesting long-distance animal transmission play an important role in the spread
      of PPRV in China. These results expanded our knowledge for PPRV evolution to
      achieve effective control measures.
CI  - Copyright (c) 2017 Elsevier Inc. All rights reserved.
FAU - Bao, Jingyue
AU  - Bao J
AD  - China Animal Health and Epidemiology Center, Qingdao, Shandong, China. Electronic
      address: [email protected]
FAU - Wang, Qinghua
AU  - Wang Q
AD  - China Animal Health and Epidemiology Center, Qingdao, Shandong, China.
FAU - Li, Lin
AU  - Li L
AD  - China Animal Health and Epidemiology Center, Qingdao, Shandong, China.
FAU - Liu, Chunju
AU  - Liu C
AD  - China Animal Health and Epidemiology Center, Qingdao, Shandong, China.
FAU - Zhang, Zhicheng
AU  - Zhang Z
AD  - China Animal Health and Epidemiology Center, Qingdao, Shandong, China.
FAU - Li, Jinming
AU  - Li J
AD  - China Animal Health and Epidemiology Center, Qingdao, Shandong, China.
FAU - Wang, Shujuan
AU  - Wang S
AD  - China Animal Health and Epidemiology Center, Qingdao, Shandong, China.
FAU - Wu, Xiaodong
AU  - Wu X
AD  - China Animal Health and Epidemiology Center, Qingdao, Shandong, China.
FAU - Wang, Zhiliang
AU  - Wang Z
AD  - China Animal Health and Epidemiology Center, Qingdao, Shandong, China. Electronic
      address: [email protected]
LA  - eng
PT  - Journal Article
DEP - 20170719
PL  - United States
TA  - Virology
JT  - Virology
JID - 0110674
SB  - IM
MH  - Animals
MH  - China/epidemiology
MH  - Cluster Analysis
MH  - *Epidemics
MH  - *Evolution, Molecular
MH  - *Genetic Variation
MH  - Genome, Viral
MH  - Goats
MH  - Molecular Epidemiology
MH  - Mutation Rate
MH  - Peste-des-Petits-Ruminants/*epidemiology/*virology
MH  - Peste-des-petits-ruminants virus/*classification/*genetics/isolation &
      purification
MH  - Phylogeny
MH  - Sequence Analysis, DNA
MH  - Sheep
OTO - NOTNLM
OT  - Evolution
OT  - Peste des petits ruminants virus
OT  - Phylogenetic analysis
OT  - Transmission
EDAT- 2017/07/25 06:00
MHDA- 2017/08/30 06:00
CRDT- 2017/07/23 06:00
PHST- 2017/05/04 [received]
PHST- 2017/07/12 [revised]
PHST- 2017/07/13 [accepted]
AID - S0042-6822(17)30236-2 [pii]
AID - 10.1016/j.virol.2017.07.018 [doi]
PST - ppublish
SO  - Virology. 2017 Oct;510:156-164. doi: 10.1016/j.virol.2017.07.018. Epub 2017 Jul
      19.